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Tion when measuring codon usage bias. Mol Biol Evol 2002, 19:1390-1394…

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작성자 Natisha (107.♡.34.170) 연락처 댓글 0건 조회 8회 작성일 23-05-24 14:49

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Tion when measuring codon usage bias. Mol Biol Evol 2002, 19:1390-1394. 42. Marth GT, Korf I, Yandell MD, Yeh RT, Gu Z, Zakeri H, Stitziel NO, Hillier L, Kwok PY, Gish WR: A general approach to single-nucleotide polymorphism discovery. Nat Genet 1999, 23:452-456. 43. Qiu XY, Wu LY, Huang HS, McDonel PE, Palumbo AV, Tiedje JM, Zhou JZ: Evaluation of PCR-generated chimeras: mutations, and heteroduplexes with 16S rRNA gene-based cloning. Appl Environ Microbiol 2001, 67:880-887. 44. Dawson SC, Pham JK, House SA, Slawson EE, Cronembold D, Cande WZ: Stable transformation of an episomal protein-tagging shuttle vector in the piscine diplomonad Spironucleus vortens. BMC Microbiol 2008, 8:71.Roxstr -Lindquist et al. BMC Genomics 2010, 11:258 http://www.biomedcentral.com/1471-2164/11/Page 14 of45. National Center for Biotechnology Information [http:// www.ncbi.nlm.nih.gov/] 46. Caccio SM, Ryan U: Molecular epidemiology of giardiasis. Mol Biochem Parasitol 2008, 160:75-80. 47. Lebbad M, Ankarklev J, Tellez A, Leiva B, Andersson JO, Sv d S: Dominance of Giardia assemblage B in Leon, Nicaragua. Acta Trop 2008, 106:44-53. 48. Fan JB, Korman SH, Cantor CR, Smith CL: Giardia lamblia : haploid genome size determined by pulsed field gel electrophoresis is less than 12 PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/25751659 Mb. Nucleic Acids Res 1991, 19:1905-1908. 49. Ramesh MA, Malik SB, Logsdon JM Jr: A phylogenomic inventory of meiotic genes; evidence for sex in Giardia and an early eukaryotic origin of meiosis. Curr Biol 2005, 15:185-191. 50. Cooper MA, Adam RD, Worobey M, Sterling CR: Population genetics provides evidence for recombination in Giardia. Curr Biol 2007, 17:1984-1988. 51. Keister DB: Axenic culture of Giardia lamblia in TYI-S-33 medium supplemented with bile. Trans R Soc Trop Med Hyg 1983, 77:487-488. 52. J gensen A, Sterud E: SSU rRNA gene sequence reveals two genotypes of Spironucleus barkhanus (Diplomonadida) from farmed and wild Arctic charr Salvelinus alpinus. Dis Aquat Organ 2004, 62:93-96. 53. Laboratory of Phil Green [http://www.phrap.org/] 54. Crooks GE, Hon G, Chandonia JM, Brenner SE: WebLogo: a sequence logo generator. Genome Res 2004, 14:1188-1190. 55. DOE Joint Genome Institute [http://www.jgi.doe.gov/] 56. O'Brien EA, Koski LB, Zhang Y, Yang L, Wang E, Gray MW, Burger G, Lang BF: TBestDB: a taxonomically broad database of expressed Nelfinavir (Mesylate) sequence tags (ESTs). Nucleic Acids Res 2007, 35:D445-451. 57. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 58. Frickey T, Lupas AN: PhyloGenie: automated phylome generation and analysis. Nucleic Acids Res 2004, 32:5231-5238. 59. ModelGenerator: amino acid and nucleotide substitution model selection [http://bioinf.nuim.ie/software/modelgenerator] 60. Stamatakis A: RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690. 61. Huelsenbeck JP, Ronquist F: MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755. 62. Supek F, Vlahovicek K: INCA: synonymous codon usage analysis and clustering by means of self-organizing map. Bioinformatics 2004, 20:2329-2330. 63. Correspondence analysis of codon usage [http:// codonw.sourceforge.net/] 64. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG: The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality anal.

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